MRIQC#
Author: Monika Doerig
Citation:
MRIQC:
Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661
The documentation of this project is found here.
Data from OpenNeuro: Flanker Dataset
Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null
Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.
Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434
Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046
Output CPU information#
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : AuthenticAMD
model name : AMD EPYC 7763 64-Core Processor
Load MRIQC#
import module
await module.purge()
await module.load('mriqc/22.0.6')
await module.list()
Lmod Warning: The environment MODULEPATH has been changed in unexpected ways.
Lmod is unable to use given MODULEPATH. It is using:
"/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/functional_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/rodent_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_registration:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/structural_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_segmentation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quantitative_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/workflows:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/hippocampus:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_reconstruction:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/data_organisation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/electrophysiology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/phase_processing:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/programming:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/machine_learning:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/diffusion_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/body:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/visualization:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spectroscopy:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quality_control:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/statistics:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/shape_analysis:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spine:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/molecular_biology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/bids_apps:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/cryo_EM::".
Please use "module use ..." to change MODULEPATH instead.
['Lmod',
'Warning:',
'The',
'environment',
'MODULEPATH',
'has',
'been',
'changed',
'in',
'unexpected',
'ways.',
'Lmod',
'is',
'unable',
'to',
'use',
'given',
'MODULEPATH.',
'It',
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'using:',
'"/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/functional_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/rodent_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_registration:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/structural_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_segmentation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quantitative_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/workflows:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/hippocampus:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/image_reconstruction:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/data_organisation:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/electrophysiology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/phase_processing:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/programming:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/machine_learning:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/diffusion_imaging:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/body:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/visualization:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spectroscopy:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/quality_control:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/statistics:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/shape_analysis:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/spine:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/molecular_biology:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/bids_apps:/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/cryo_EM::".',
'Please',
'use',
'"module',
'use',
'to',
'change',
'MODULEPATH',
'instead.',
'mriqc/22.0.6']
!mriqc -help
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
[--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
[--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
[--bids-database-dir PATH] [--nprocs NPROCS]
[--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
[--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
[--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
[--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
[--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
[--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
[--fd_thres FD_THRES] [--deoblique] [--despike]
[--start-idx START_IDX] [--stop-idx STOP_IDX]
bids_dir output_dir {participant,group} [{participant,group} ...]
mriqc: error: argument -h/--help: ignored explicit argument 'elp'
Data preparation#
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03
It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables.
Clone attempt: 0%| | 0.00/2.00 [00:00<?, ? Candidate locations/s]
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Resolving: 0%| | 0.00/537 [00:00<?, ? Deltas/s]
[INFO ] Author identity unknown
|
| *** Please tell me who you are.
|
| Run
|
| git config --global user.email "you@example.com"
| git config --global user.name "Your Name"
|
| to set your account's default identity.
| Omit --global to set the identity only in this repository.
|
| fatal: empty ident name (for <runner@pkrvmfw4aktn2gb.1vi0t330zhkepje5rbhct212od.ex.internal.cloudapp.net>) not allowed
[INFO ] scanning for unlocked files (this may take some time)
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| datalad siblings -d "/tmp/tmp9dm8avtl/ds000102" enable -s s3-PRIVATE
install(ok): /tmp/tmp9dm8avtl/ds000102 (dataset)
It is highly recommended to configure Git before using DataLad. Set both 'user.name' and 'user.email' configuration variables.
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Total: 33%|█████████ | 68.2M/204M [00:03<00:06, 22.0M Bytes/s]
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get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03 (directory)
get(ok): sub-01 (directory)
get(ok): sub-02 (directory)
action summary:
get (ok: 12)
The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.
Positional Arguments#
bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.analysis_level: Possible choices: participant, group
Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.
-v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.
Options to handle performance#
--nprocs, --n_procs, --n_cpus, -n-cpusMaximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.--mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.
Instrumental options#
-w, --work-dir: Path where intermediate results should be stored.--verbose-reports: Generate verbose HTML reports with additional details--no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.
!
Warning:
--no-sub and --notrack may be necessary in environments with limited internet access, where automatic submission of quality metrics to MRIQC's web server and tracking data to NiPreps developers may fail or trigger runtime errors.
Participant-level Analysis#
%%bash
# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir
# Run MRIQC
mriqc ds000102 \
MRIQC \
participant \
--participant-label sub-01 sub-02 sub-03 \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
250617-05:01:04,489 cli IMPORTANT:
Running MRIQC version 22.0.6:
* BIDS dataset path: /
tmp/tmp9dm8avtl/ds000102.
* Output folder: /tmp/tmp9dm8avtl/MRIQC.
* Analysis levels: ['
participant'].
250617-05:01:05,882 nipype.workflow INFO:
Building functional MRIQC workflow for files: /tmp/tmp9d
m8avtl/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /tmp/tmp9dm8avtl/ds000102/sub-01/
func/sub-01_task-flanker_run-2_bold.nii.gz, /tmp/tmp9dm8avtl/ds000102/sub-02/func/sub-02_task-flanke
r_run-1_bold.nii.gz, /tmp/tmp9dm8avtl/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /t
mp/tmp9dm8avtl/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /tmp/tmp9dm8avtl/ds000102
/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
250617-05:01:07,804 nipype.workflow INFO:
Building anatomical MRIQC workflow for 3 NIfTI files..
250617-05:01:18,388 nipype.workflow INFO:
Workflow mriqc_wf settings: ['check', 'execution', 'logg
ing', 'monitoring']
250617-05:01:18,604 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/
tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat
..sub-01_T1w.nii.gz/datalad_get".
250617-05:01:18,604 nipype.workflow INFO:
[Node] Setting-up "mri
qc_wf.anatMRIQC.datalad_get" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
250617-05:01:18,607 nipype.workflow INFO:
[Node] Executing "datalad_get" <mriqc.interfaces.datalad
.DataladIdentityInterface>
250617-05:01:18,608 nipype.workflow INFO:
[Node] Executing "datalad_get
" <mriqc.interfaces.datalad.DataladIdentityInterface>
250617-05:01:18,610 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
250617-05:01:18,615 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/
tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat
..sub-03_T1w.nii.gz/datalad_get".
250617-05:01:18,616 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.
AddProvenance>
250617-05:01:18,617 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non
_steady_state_detector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250617-05:01:18,622 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.alg
orithms.confounds.NonSteadyStateDetector>
250617-05:01:18,622 nipype.workflow INFO:
[Node] Executi
ng "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
250617-05:01:18,688 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.050187s.
250617-05:01:18,824 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
250617-05:01:18,828 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:18,867 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.229058s.
250617-05:01:19,659 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.830455s.
250617-05:01:19,753 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
250617-05:01:19,754 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_d
etector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102
..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250617-05:01:19,75
5 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250
617-05:01:19,755 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algori
thms.confounds.NonSteadyStateDetector>
250617-05:01:19,806 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.05046s.
250617-05:01:19,911 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
250617-05:01:19,912 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:19,981 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.224312s.
250617-05:01:20,400 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 1.7706870000
000001s.
250617-05:01:20,400 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 1.7
71312s.
250617-05:01:20,400 nipype.workflow INFO:
[Node] Finished "datalad_get", elapsed time 1.75
7273s.
250617-05:01:20,620 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.706454s.
250617-05:01:20,784 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
250617-05:01:20,785 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_d
etector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102
..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250617-05:01:20,78
6 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250
617-05:01:20,786 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.algori
thms.confounds.NonSteadyStateDetector>
250617-05:01:20,837 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.050358s.
250617-05:01:20,926 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
250617-05:01:20,928 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:20,991 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.2037s.
250617-05:01:21,573 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.644718s.
250617-05:01:21,659 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
250617-05:01:21,661 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_d
etector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102
..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250617-05:01:21,661 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.
AddProvenance>
250617-05:01:21,662 nipype.workflow INFO:
[Node] Executing "non_steady_state_detect
or" <nipype.algorithms.confounds.NonSteadyStateDetector>
250617-05:01:21,713 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.050964s.
250617-05:01:21,806 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
250617-05:01:21,808 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:21,877 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.214359s.
250617-05:01:22,456 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.647293s.
250617-05:01:22,549 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
250617-05:01:22,550 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_d
etector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102
..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
250617-05:01:22,55
1 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250617-05:01:22,552 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.alg
orithms.confounds.NonSteadyStateDetector>
250617-05:01:22,602 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.04966s.
250617-05:01:22,697 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
250617-05:01:22,698 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:22,761 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.207466s.
250617-05:01:23,346 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.646685s.
250617-05:01:23,432 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
250617-05:01:23,433 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_d
etector" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102
..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
250617-05:01:23,43
4 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
250617-05:01:23,435 nipype.workflow INFO:
[Node] Executing "non_steady_state_detector" <nipype.alg
orithms.confounds.NonSteadyStateDetector>
250617-05:01:23,485 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.049886s.
250617-05:01:23,578 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
250617-05:01:23,580 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:23,638 nipype.workflow INFO:
[Node] Finished "non_steady_state_detector", elapsed tim
e 0.202118s.
250617-05:01:24,221 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 0.639799s.
250617-05:01:24,310 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/
tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..su
b-01_T1w.nii.gz/conform".
250617-05:01:24,312 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conf
orm_image.ConformImage>
250617-05:01:24,398 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
250617-05:01:24,400 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:24,410 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/
tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..su
b-02_T1w.nii.gz/conform".
250617-05:01:24,413 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metada
ta" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
250617-05:01:24,414 nipype.workflow INFO:
[Nod
e] Setting-up "mriqc_wf.anatMRIQC.conform" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in
_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
250617-05:01:24,416 ni
pype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
250617-05:01:24,418 nipype.workflow INFO:
[Node] Executing "conform" <mriqc.interfaces.common.conf
orm_image.ConformImage>
250617-05:01:24,424 nipype.workflow INFO:
[Node] Executing "conform" <mriq
c.interfaces.common.conform_image.ConformImage>
250617-05:01:24,424 nipype.workflow INFO:
[Node] S
etting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anat
MRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
250617-05:01:24,431 nipype.workflow INFO:
[Node] Executing "metadata" <niworkflows.interfaces.bids
.ReadSidecarJSON>
250617-05:01:25,254 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.940731s.
250617-05:01:25,289 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 0.863279s.
250617-05:01:25,431 nipype.workflow INFO:
[Node] Finished "conform", elapsed time 1.011699s.
250617-05:01:25,718 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.285374s.
250617-05:01:25,771 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.354436s.
250617-05:01:25,782 nipype.workflow INFO:
[Node] Finished "metadata", elapsed time 1.380611s.
250617-05:01:26,434 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/tmp
/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..s
ub-01_task-flanker_run-1_bold.nii.gz/sanitize".
250617-05:01:26,434 nipype.workflow INFO:
[Node] S
etting-up "mriqc_wf.funcMRIQC.sanitize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_fi
le_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
2506
17-05:01:26,435 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-0
2_task-flanker_run-1_bold.nii.gz/sanitize".
250617-05:01:26,436 nipype.workflow INFO:
[Node] Setti
ng-up "mriqc_wf.funcMRIQC.sanitize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
250617-05:01:26,437 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.head
er.SanitizeImage>
250617-05:01:26,437 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/tmp
/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..s
ub-03_task-flanker_run-1_bold.nii.gz/sanitize".
250617-05:01:26,438 nipype.workflow INFO:
[Node] E
xecuting "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250617-05:01:26,439 nipype.workflo
w INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250617-05:01:26,
439 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage
>
250617-05:01:26,439 nipype.workflow INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.he
ader.SanitizeImage>
250617-05:01:26,440 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQ
C.sanitize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000
102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
250617-05:01:26,442 nipype.workf
low INFO:
[Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
250617-05:01:26,496 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.057062s.
250617-05:01:26,544 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 0.106705s.
250617-05:01:28,158 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 1.713447s.
250617-05:01:28,158 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 1.7181920000000
002s.
250617-05:01:28,161 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 1.7210109999999
998s.
250617-05:01:28,202 nipype.workflow INFO:
[Node] Finished "sanitize", elapsed time 1.756121s.
250617-05:01:28,400 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_
clip" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
250617-05:01:28,400 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.Ro
tationMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
250617-05:01:28,400 nipype.workf
low INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/tmp/tmp9dm8a
vtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..
anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
250617-05:01:28,402 nipype.workflow INFO:
[Node] Executi
ng "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250617-05:01:28,402 nipype.workflow INF
O:
[Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
250617-05:01:28,403
nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/tmp/tmp9d
m8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02.
.anat..sub-02_T1w.nii.gz/pre_clip".
250617-05:01:28,403 nipype.workflow INFO:
[Node] Setting-up "m
riqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQ
C/AirMaskWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMas
k".
250617-05:01:28,405 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:01:28,405 nipype.workflow INFO:
[Node] Executing "RotationMask" <mriqc.inte
rfaces.anatomical.RotationMask>
250617-05:01:28,406 nipype.workflow INFO:
[Node] Setting-up "mriqc
_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC
/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNo
ise".
250617-05:01:28,406 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interface
s.nibabel.IntensityClip>
250617-05:01:28,409 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoi
se" <mriqc.interfaces.viz.PlotMosaic>
250617-05:01:30,239 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.827659000
0000001s.
250617-05:01:30,307 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 1.903886s.
250617-05:01:30,565 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_
clip" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
250617-05:01:30,568 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.Ro
tationMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
250617-05:01:30,570 nipype.workf
low INFO:
[Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
250617-05:01:30,579 nipype.workflow INFO:
[Node] Executing "pre_clip" <niworkflows.interfaces.niba
bel.IntensityClip>
250617-05:01:32,876 nipype.workflow INFO:
[Node] Finished "RotationMask", elapsed time 2.305257s.
250617-05:01:34,488 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
250617-05:01:34,499 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:01:48,857 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 20.44763
s.
250617-05:01:48,868 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 20.46258
s.
250617-05:01:50,517 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
250617-05:01:50,520 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
250617-05:01:50,525 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility
.wrappers.Function>
250617-05:01:50,526 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:01:53,161 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 18.66154
s.
250617-05:01:54,592 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
250617-05:01:54,602 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:01:59,46 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 8.520191s.
250617-05:01:59,779 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 31.375363s.
250617-05:02:00,551 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
250617-05:02:00,554 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility
.wrappers.Function>
250617-05:02:00,559 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
250617-05:02:00,566 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:02:03,948 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 35.540573s.
250617-05:02:04,561 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
250617-05:02:04,568 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility
.wrappers.Function>
250617-05:02:04,999 nipype.workflow INFO:
[Node] Finished "pre_clip", elapsed time 34.418423s.
250617-05:02:05,691 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 5.135675s.
250617-05:02:06,542 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
250617-05:02:06,546 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
250617-05:02:06,
548 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Functi
on>
250617-05:02:06,553 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:02:07,459 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 2.888547s.
250617-05:02:08,626 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
250617-05:02:08,635 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:02:12,465 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 5.908761s.
250617-05:02:14,551 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
250617-05:02:14,556 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility
.wrappers.Function>
250617-05:02:20,770 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 6.212294s.
250617-05:02:22,572 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_co
rrect" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
250617-05:02:22,582 nipype.workflow INFO:
[Node] Executing "motion_correct" <nipype.interfaces.afn
i.preprocess.Volreg>
250617-05:05:52,997 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 242.46642
6s.
250617-05:05:55,82 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Spi
kesMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
250617-05:05:55,90 nipype.workflow INFO:
[Node] Executing "SpikesMask" <nipype.interfaces.utility.
wrappers.Function>
250617-05:05:57,948 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 243.34356
s.
250617-05:05:59,61 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n
4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
250617-05:05:59,71 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segment
ation.N4BiasFieldCorrection>
250617-05:06:01,258 nipype.workflow INFO:
[Node] Finished "SpikesMask", elapsed time 6.163585s.
250617-05:06:03,44 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n
4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
250617-05:06:03,47 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segment
ation.N4BiasFieldCorrection>
250617-05:06:08,656 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 248.08829
s.
250617-05:06:09,119 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_
n4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
250617-05:06:09,142 nipype.workflow INFO:
[Node] Executing "pre_n4" <nipype.interfaces.ants.segmen
tation.N4BiasFieldCorrection>
250617-05:06:32,633 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 266.06619
1s.
250617-05:06:33,442 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
250617-05:06:33,456 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confound
s.FramewiseDisplacement>
250617-05:06:33,474 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.016747s.
250617-05:06:35,228 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 266.59148
5s.
250617-05:06:35,393 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-0
1_task-flanker_run-1_bold.nii.gz/mean".
250617-05:06:35,411 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TS
tat>
250617-05:06:37,448 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..fun
c..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250617-05:06:37,470 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:06:38,229 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.816789s.
250617-05:06:39,328 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
250617-05:06:39,339 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.prepr
ocess.QualityIndex>
250617-05:06:39,787 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.315931s.
250617-05:06:41,512 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250617-05:06:41,519 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:06:43,208 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.685
637s.
250617-05:06:45,374 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
250617-05:06:45,382 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confound
s.FramewiseDisplacement>
250617-05:06:45,400 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.009653s.
250617-05:06:45,654 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 6.311513s.
250617-05:06:47,432 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-0
1_task-flanker_run-2_bold.nii.gz/mean".
250617-05:06:47,435 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..fun
c..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250617-05:06:47,439 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250617-05:06:47,451 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:06:49,907 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.454939s.
250617-05:06:50,206 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.765605s.
250617-05:06:51,410 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
250617-05:06:51,424 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250617-05:06:51,431 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.prepr
ocess.QualityIndex>
250617-05:06:51,436 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:06:53,402 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.960
167s.
250617-05:06:55,529 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
250617-05:06:55,546 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confound
s.FramewiseDisplacement>
250617-05:06:55,563 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.01449s.
250617-05:06:57,485 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 6.04342s.
250617-05:06:57,531 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-0
2_task-flanker_run-1_bold.nii.gz/mean".
250617-05:06:57,534 nipype.workflow INFO:
[Node] Executing
"mean" <nipype.interfaces.afni.utils.TStat>
250617-05:06:59,418 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..fun
c..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250617-05:06:59,423 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:06:59,978 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.422718s.
250617-05:07:01,589 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
250617-05:07:01,596 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.162644000
0000002s.
250617-05:07:01,604 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.prepr
ocess.QualityIndex>
250617-05:07:03,517 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250617-05:07:03,538 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:07:05,287 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.747
56s.
250617-05:07:05,459 nipype.workflow INFO:
[Node] Finished "motion_correct", elapsed time 282.87491
3s.
250617-05:07:06,917 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 5.311965s.
250617-05:07:07,459 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
250617-05:07:07,461 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-0
2_task-flanker_run-2_bold.nii.gz/mean".
250617-05:07:07,464 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..fun
c..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250617-05:07:07,465 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250617-05:07:07,467
nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
250617-05:07:07,472 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:07:07,475 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.0
09204s.
250617-05:07:09,479 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
250617-05:07:09,481 nipype.wor
kflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
250617-05:07:09,593 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.107629s.
250617-05:07:10,798 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 3.330129s.
250617-05:07:11,426 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250617-05:07:11,432 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
250617-05:07:11,441 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:07:11,444 nipype.workflow INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confound
s.FramewiseDisplacement>
250617-05:07:11,458 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.013234s.
250617-05:07:12,917 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.475
253s.
250617-05:07:13,484 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-0
3_task-flanker_run-1_bold.nii.gz/mean".
250617-05:07:13,487 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..fun
c..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
250617-05:07:13,496 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TS
tat>
250617-05:07:13,505 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:07:14,724 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 5.223105s.
250617-05:07:15,574 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
250617-05:07:15,606 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.prepr
ocess.QualityIndex>
250617-05:07:15,853 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 2.346921s.
250617-05:07:17,80 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 3.583578s.
250617-05:07:17,527 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
250617-05:07:17,540 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:07:19,345 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.803
5860000000001s.
250617-05:07:19,541 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD
" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
250617-05:07:19,544 nipype.workf
low INFO:
[Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
250617-05:07:19,569 nipype.workflow INFO:
[Node] Finished "ComputeFD", elapsed time 0.010836s.
250617-05:07:21,543 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/tmp/tmp
9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-0
3_task-flanker_run-2_bold.nii.gz/mean".
250617-05:07:21,551 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..fun
c..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
250617-05:07:21,566 nipype.workflow INFO:
[Node] Executing "mean" <nipype.interfaces.afni.utils.TS
tat>
250617-05:07:21,569 nipype.workflow INFO:
[Node] Executing "compute_tsnr" <nipype.algorithms.confo
unds.TSNR>
250617-05:07:21,898 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 6.290492s.
250617-05:07:23,266 nipype.workflow INFO:
[Node] Finished "compute_tsnr", elapsed time 1.696357s.
250617-05:07:23,627 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.qualit
y" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
250617-05:07:23,638 nipype.workflow INFO:
[Node] Executing "quality" <nipype.interfaces.afni.prepr
ocess.QualityIndex>
250617-05:07:23,674 nipype.workflow INFO:
[Node] Finished "mean", elapsed time 2.107382s.
250617-05:07:25,575 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Sp
ikesFinderBgMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..t
mp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
250617-05:07:25,586 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
250617-05:07:25,589 nipype.workflow INFO:
[Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.
functional.Spikes>
250617-05:07:25,595 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.prep
rocess.Automask>
250617-05:07:26,791 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.192038s.
250617-05:07:27,260 nipype.workflow INFO:
[Node] Finished "SpikesFinderBgMask", elapsed time 1.670
253s.
250617-05:07:27,613 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250617-05:07:27,631 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.se
gmentation.N4BiasFieldCorrection>
250617-05:07:29,152 nipype.workflow INFO:
[Node] Finished "quality", elapsed time 5.512882s.
250617-05:07:29,593 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250617-05:07:29,599 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.
PlotMosaic>
250617-05:07:31,606 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250617
-05:07:31,608 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotM
osaic>
250617-05:07:35,457 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 7.394s.
250617-05:07:37,663 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250617-05:07
:37,665 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
250617-05:07:43,136 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 13.531368
s.
250617-05:07:43,649 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
250617-05:07:43,652 nipy
pe.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
250617-05:07:45,762 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 2.086587s.
250617-05:07:46,406 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 14.77679
5s.
250617-05:07:47,427 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250617-05:07:47,429 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250617-0
5:07:47,431 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentati
on.N4BiasFieldCorrection>
250617-05:07:47,432 nipype.workflow INFO:
[Node] Executing "PlotMosaicMe
an" <mriqc.interfaces.viz.PlotMosaic>
250617-05:07:52,554 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 14.869974s.
250617-05:07:53,541 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250617-05:07:53,559 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:07:55,791 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 6.714008s.
250617-05:07:57,522 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250617-05:07:57,527 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.Pl
otMosaic>
250617-05:07:58,634 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 11.199792
s.
250617-05:07:59,67 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 119.301643s.
250617-05:07:59,455 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synt
hstrip" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8a
vtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
250617-05:07:59,460 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
250617-05:07:59,463 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstr
ip.SynthStrip>
250617-05:07:59,469 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.prep
rocess.Automask>
250617-05:08:00,230 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.759838s.
250617-05:08:01,38 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 117.133478s.
250617-05:08:01,127 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 7.56729s
.
250617-05:08:01,355 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synt
hstrip" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8a
vtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
250617-05:08:01,356 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250617
-05:08:01,358 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosa
icMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250617-05:08:0
1,358 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
250617-05:08:01,358 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.s
egmentation.N4BiasFieldCorrection>
250617-05:08:01,361 nipype.workflow INFO:
[Node] Executing "Plo
tMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
250617-05:08:03,207 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.677633s.
250617-05:08:03,397 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250617
-05:08:03,399 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotM
osaic>
250617-05:08:03,443 nipype.workflow INFO:
[Node] Finished "pre_n4", elapsed time 113.8576s.
250617-05:08:04,757 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 3.397012s.
250617-05:08:05,365 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synt
hstrip" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8a
vtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
250617-05:08:05,365 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250617-05:08:05,373 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.Pl
otMosaic>
250617-05:08:05,376 nipype.workflow INFO:
[Node] Executing "synthstrip" <mriqc.interface
s.synthstrip.SynthStrip>
250617-05:08:06,584 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 5.219244s
.
250617-05:08:07,397 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
250617-05:08:07,401 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.prep
rocess.Automask>
250617-05:08:07,807 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 0.405264s.
250617-05:08:08,262 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 4.85923s
.
250617-05:08:09,350 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250617-05:08:09,351 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250617-0
5:08:09,353 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosa
ic>
250617-05:08:09,353 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ant
s.segmentation.N4BiasFieldCorrection>
250617-05:08:09,467 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 4.093656s.
250617-05:08:11,532 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250617-05:08:11,534 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:08:13,351 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 3.995521s.
250617-05:08:15,402 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.048607s
.
250617-05:08:15,508 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250617-05:08:15,512 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.Pl
otMosaic>
250617-05:08:17,510 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
250617-05:08:17,519 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.prep
rocess.Automask>
250617-05:08:18,137 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.592462
s.
250617-05:08:18,650 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.130381s.
250617-05:08:19,443 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
250617-05:08:19,446 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
250617-0
5:08:19,448 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentati
on.N4BiasFieldCorrection>
250617-05:08:19,449 nipype.workflow INFO:
[Node] Executing "PlotMosaicMe
an" <mriqc.interfaces.viz.PlotMosaic>
250617-05:08:21,4 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 5.487159s.
250617-05:08:21,437 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
250617-05:08:21,441 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:08:23,590 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 4.137334s.
250617-05:08:25,552 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
250617-05:08:25,558 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.Pl
otMosaic>
250617-05:08:26,838 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 7.381696s
.
250617-05:08:27,528 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni
_msk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
250617-05:08:27,534 nipype.workflow INFO:
[Node] Executing "afni_msk" <nipype.interfaces.afni.prep
rocess.Automask>
250617-05:08:28,115 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.67204s
.
250617-05:08:28,755 nipype.workflow INFO:
[Node] Finished "afni_msk", elapsed time 1.216552s.
250617-05:08:29,511 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.SharpenEPI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_.
.tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
250617
-05:08:29,513 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosa
icMean" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
250617-05:08:29,515 nipype.workflow INFO:
[Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.
PlotMosaic>
250617-05:08:29,516 nipype.workflow INFO:
[Node] Executing "SharpenEPI" <nipype.interf
aces.ants.segmentation.N4BiasFieldCorrection>
250617-05:08:31,771 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 6.211005s.
250617-05:08:33,403 nipype.workflow INFO:
[Node] Finished "SharpenEPI", elapsed time 3.885535s.
250617-05:08:33,529 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicNoise" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
250617-05:08:33,536 nipype.workflow INFO:
[Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:08:35,476 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicSD" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
250617-05:08:35,484 nipype.workflow INFO:
[Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.Pl
otMosaic>
250617-05:08:36,70 nipype.workflow INFO:
[Node] Finished "PlotMosaicMean", elapsed time 6.549061s.
250617-05:08:37,573 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Comput
eDVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250617-05:08:37,581 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confo
unds.ComputeDVARS>
250617-05:08:40,463 nipype.workflow INFO:
[Node] Finished "PlotMosaicNoise", elapsed time 6.924561
s.
250617-05:08:41,504 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
250617-05:08:41,514 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:08:42,1 nipype.workflow INFO:
[Node] Finished "PlotMosaicSD", elapsed time 6.515677s.
250617-05:08:43,468 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outlie
rs" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
250617-05:08:43,479 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prep
rocess.OutlierCount>
250617-05:08:44,691 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 3.175707s.
250617-05:08:45,505 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor"
in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000
102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
250617-05:08:45,514 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.G
COR>
250617-05:08:46,129 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.645608s.
250617-05:08:47,521 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.di
lated_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
250617-05:08:47,527 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.
morphology.BinaryDilation>
250617-05:08:47,581 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.050727s.
250617-05:08:49,469 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250617-05:08:49,524 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:08:52,780 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 14.769032s.
250617-05:08:55,483 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250617-05:08:55,568 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.vi
z.PlotMosaic>
250617-05:09:01,382 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 5.79256
1s.
250617-05:09:03,501 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.EPI2MNI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tm
p..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250617-05:09:03,518 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 18.002742s.
250617-05:09:03,523 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.repor
tlets.registration.SpatialNormalizationRPT>
250617-05:09:05,721 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Comput
eDVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250617-05:09:05,751 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confo
unds.ComputeDVARS>
250617-05:09:07,675 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 18.14997s.
250617-05:09:09,630 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
250617-05:09:09,644 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:09:13,312 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 3.666646s.
250617-05:09:13,506 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outlie
rs" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
250617-05:09:13,510 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prep
rocess.OutlierCount>
250617-05:09:16,402 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.888995s.
250617-05:09:17,605 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor"
in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000
102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
250617-05:09:17,621 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.G
COR>
250617-05:09:22,858 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 5.233433s.
250617-05:09:23,65 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 17.311876s.
250617-05:09:23,693 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.di
lated_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
250617-05:09:23,700 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250617-05:09:23,706 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:09:23,706 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflow
s.interfaces.morphology.BinaryDilation>
250617-05:09:23,748 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.041199s.
250617-05:09:25,711 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250617-05:09:25,727 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.vi
z.PlotMosaic>
250617-05:09:32,851 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 7.11889
2s.
250617-05:09:33,696 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.EPI2MNI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tm
p..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250617-05:09:33,713 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.repor
tlets.registration.SpatialNormalizationRPT>
250617-05:09:33,833 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.126582s
.
250617-05:09:35,734 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Comput
eDVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250617-05:09:35,749 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confo
unds.ComputeDVARS>
250617-05:09:43,866 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 98.488889s.
250617-05:09:45,594 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 9.839854s.
250617-05:09:45,652 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post
_n4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
250617-05:09:45,665 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segme
ntation.N4BiasFieldCorrection>
250617-05:09:47,624 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
250617-05:09:47,636 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:09:48,508 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 107.138029s.
250617-05:09:49,856 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post
_n4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
250617-05:09:49,886 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segme
ntation.N4BiasFieldCorrection>
250617-05:09:51,580 nipype.workflow INFO:
[Node] Finished "synthstrip", elapsed time 112.11559s.
250617-05:09:53,899 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post
_n4" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
250617-05:09:53,914 nipype.workflow INFO:
[Node] Executing "post_n4" <nipype.interfaces.ants.segme
ntation.N4BiasFieldCorrection>
250617-05:10:13,759 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 26.111018s.
250617-05:10:16,154 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
250617-05:10:16,161 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:10:41,649 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 25.479351s.
250617-05:10:41,866 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 56.198089s.
250617-05:10:43,863 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
250617-05:10:43,863 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
250617-05:10:43,867 nipy
pe.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
250617-05:10:43,873 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:10:45,529 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 55.6378289999999
96s.
250617-05:10:46,13 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothn
ess" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
250617-05:10:46,34 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.uti
ls.FWHMx>
250617-05:10:51,475 nipype.workflow INFO:
[Node] Finished "post_n4", elapsed time 56.673442s.
250617-05:10:52,97 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Plo
tMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
250617-05:10:52,112 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.vi
z.PlotMosaic>
250617-05:11:01,140 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 17.258675s
.
250617-05:11:02,83 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Plo
tBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
250617-05:11:02,100 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:11:12,234 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 26.196278s.
250617-05:11:14,34 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Plo
tMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
250617-05:11:14,44 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:11:14,962 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 12.860285s
.
250617-05:11:15,998 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
250617-05:11:16,9 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:11:22,416 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 38.5476
53s.
250617-05:11:24,22 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothn
ess" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
250617-05:11:24,39 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.uti
ls.FWHMx>
250617-05:11:25,805 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 9.794098s.
250617-05:11:27,777 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 3.7351s.
250617-05:11:27,979 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outlie
rs" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
250617-05:11:27,991 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prep
rocess.OutlierCount>
250617-05:11:30,33 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" i
n "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
250617-05:11:30,40 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GC
OR>
250617-05:11:30,397 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.400071s.
250617-05:11:32,5 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dila
ted_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
250617-05:11:32,13 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.m
orphology.BinaryDilation>
250617-05:11:32,39 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 39.92632
9s.
250617-05:11:32,44 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.025385s.
250617-05:11:33,841 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250617-05:11:33,848 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250617-05:11:33,852 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:11:33,857 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.
interfaces.viz.PlotMosaic>
250617-05:11:35,286 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 5.238945s.
250617-05:11:36,3 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization
.EPI2MNI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250617-05:11:36,15 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.report
lets.registration.SpatialNormalizationRPT>
250617-05:11:43,679 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 9.82149
3s.
250617-05:11:44,39 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Compute
DVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250617-05:11:44,48 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confou
nds.ComputeDVARS>
250617-05:11:44,361 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.507367s
.
250617-05:11:46,116 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
250617-05:11:46,126 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:11:46,757 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 32.7095
88s.
250617-05:11:47,996 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outlie
rs" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
250617-05:11:48,8 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prepro
cess.OutlierCount>
250617-05:11:48,692 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.564631s.
250617-05:11:49,994 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor"
in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000
102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
250617-05:11:50,9 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.interfaces.transitional.GCO
R>
250617-05:11:51,9 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.998902s.
250617-05:11:51,985 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.di
lated_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
250617-05:11
:51,987 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.B
inaryDilation>
250617-05:11:52,468 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.473797s.
250617-05:11:54,89 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Plo
tBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250617-05:11:54,92 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 4.082298s.
250617-05:11:54,103 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.P
lotContours>
250617-05:11:56,109 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
250617-05:11:56,116 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.vi
z.PlotMosaic>
250617-05:11:57,176 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 13.123795s.
250617-05:11:58,92 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Compute
DVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
250617-05:11:58,101 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confo
unds.ComputeDVARS>
250617-05:12:04,505 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 8.38125
4s.
250617-05:12:04,762 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.657965s
.
250617-05:12:06,4 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothne
ss" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
250617-05:12:06,9 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.util
s.FWHMx>
250617-05:12:06,12 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outlier
s" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
250617-05:12:06,22 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prepr
ocess.OutlierCount>
250617-05:12:08,101 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.081208s.
250617-05:12:08,578 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 2.554003s.
250617-05:12:10,10 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" i
n "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds0001
02..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
250617-05:12:10,14 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dil
ated_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
250617-05:12:10,17 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.m
orphology.BinaryDilation>
250617-05:12:10,17 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.
interfaces.transitional.GCOR>
250617-05:12:10,64 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.041474s.
250617-05:12:10,142 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 12.03612s.
250617-05:12:12,60 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Plo
tBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
250617-05:12:12,62 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Plo
tMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp.
.tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
250617-05:12:12,76 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.Pl
otContours>
250617-05:12:12,78 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz
.PlotMosaic>
250617-05:12:13,431 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 3.403712s.
250617-05:12:14,119 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.Comput
eDVARS" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
250617-05:12:14,133 nipype.workflow INFO:
[Node] Executing "ComputeDVARS" <nipype.algorithms.confo
unds.ComputeDVARS>
250617-05:12:20,254 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 8.17488
2s.
250617-05:12:21,23 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 8.9465s.
250617-05:12:21,968 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smooth
ness" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
250617-05:12:21,968 nipy
pe.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/tmp/tmp9dm8avtl
/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..s
ub-03_task-flanker_run-2_bold.nii.gz/outliers".
250617-05:12:21,976 nipype.workflow INFO:
[Node] Executing "outliers" <nipype.interfaces.afni.prep
rocess.OutlierCount>
250617-05:12:21,985 nipype.workflow INFO:
[Node] Executing "smoothness" <nipype.interfaces.afni.ut
ils.FWHMx>
250617-05:12:24,351 nipype.workflow INFO:
[Node] Finished "smoothness", elapsed time 2.36433599999
99998s.
250617-05:12:25,43 nipype.workflow INFO:
[Node] Finished "outliers", elapsed time 3.05978s.
250617-05:12:26,9 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in
"/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds00010
2..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
250617-05:12:26,10 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dil
ated_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
250617-05:12:26,15 nipype.workflow INFO:
[Node] Executing "dilated_mask" <niworkflows.interfaces.m
orphology.BinaryDilation>
250617-05:12:26,16 nipype.workflow INFO:
[Node] Executing "gcor" <mriqc.
interfaces.transitional.GCOR>
250617-05:12:26,86 nipype.workflow INFO:
[Node] Finished "dilated_mask", elapsed time 0.069619s.
250617-05:12:27,662 nipype.workflow INFO:
[Node] Finished "ComputeDVARS", elapsed time 13.527598s.
250617-05:12:28,123 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otBrainmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
250617-05:12:28,127 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Pl
otMosaicZoomed" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
2506
17-05:12:28,136 nipype.workflow INFO:
[Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotC
ontours>
250617-05:12:28,139 nipype.workflow INFO:
[Node] Executing "PlotMosaicZoomed" <mriqc.inte
rfaces.viz.PlotMosaic>
250617-05:12:30,522 nipype.workflow INFO:
[Node] Finished "gcor", elapsed time 4.5049s.
250617-05:12:32,207 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.fina
l_inu" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8av
tl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
250617-05:12:32,219 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.
wrappers.Function>
250617-05:12:34,820 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 2.599412s.
250617-05:12:36,106 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.fina
l_masked" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
250617-05:12:36,118 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.
nibabel.ApplyMask>
250617-05:12:36,577 nipype.workflow INFO:
[Node] Finished "PlotMosaicZoomed", elapsed time 8.43784
4s.
250617-05:12:37,375 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 1.25565s.
250617-05:12:37,889 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 214.361496s.
250617-05:12:38,6 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_
inu" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avtl
..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
250617-05:12:38,6 nipype.workflow INFO:
[N
ode] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mri
qc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii
.gz/fsl_bet".
250617-05:12:38,14 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preproc
ess.BET>
250617-05:12:38,16 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.
utility.wrappers.Function>
250617-05:12:38,281 nipype.workflow INFO:
[Node] Finished "PlotBrainmask", elapsed time 10.144532s
.
250617-05:12:39,982 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 1.965173s.
250617-05:12:40,179 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.fina
l_masked" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
250617-05:12:40,180 nipype.workflow
INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/tmp/tmp9dm8avtl/MRI
QC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..fu
nc..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250617-05:12:40,186 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.
nibabel.ApplyMask>
250617-05:12:40,189 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflo
ws.interfaces.reportlets.registration.SpatialNormalizationRPT>
250617-05:12:41,714 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 1.527689s.
250617-05:12:42,34 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 188.318238s.
250617-05:12:42,91 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fs
l_bet" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
250617-05:12:42,97 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final
_inu" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm8avt
l..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
250617-05:12:42,103 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
250617-05:12:42,117 nipype.workflow INFO:
[Node] Executing "final_inu" <nipype.interfaces.utility.
wrappers.Function>
250617-05:12:44,313 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.EPI2MNI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tm
p..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
250617-05:12:44,325 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.repor
tlets.registration.SpatialNormalizationRPT>
250617-05:12:45,322 nipype.workflow INFO:
[Node] Finished "final_inu", elapsed time 3.203532s.
250617-05:12:46,150 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.fina
l_masked" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
250617-05:12:46,158 nipype.workflow INFO:
[Node] Executing "final_masked" <niworkflows.interfaces.
nibabel.ApplyMask>
250617-05:12:48,295 nipype.workflow INFO:
[Node] Finished "final_masked", elapsed time 2.134147s.
250617-05:12:50,424 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.f
sl_bet" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
250617-05:12:50,438 nipype.workflow INFO:
[Node] Executing "fsl_bet" <nipype.interfaces.fsl.prepro
cess.BET>
250617-05:15:11,530 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 215.514009s.
250617-05:15:12,571 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.EPI2MNI" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..tm
p..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
250617-05:15:12,577 nipype.workflow INFO:
[Node] Executing "EPI2MNI" <niworkflows.interfaces.repor
tlets.registration.SpatialNormalizationRPT>
250617-05:15:57,425 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 195.320778s.
250617-05:15:58,626 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
250617-05:15:58,650 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional
.FunctionalQC>
250617-05:15:59,791 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.130723s.
250617-05:16:00,589 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.su
btract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
250617-05:16:00,598 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces
.morphology.BinarySubtraction>
250617-05:16:00,616 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 196.285885s.
250617-05:16:00,629 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.029179s.
250617-05:16:02,705 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalizati
on.SpatialNormalization" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
250617-05:16:02,709 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleS
egmentation".
250617-05:16:02,721 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.int
erfaces.reportlets.registration.SpatialNormalizationRPT>
250617-05:16:02,722 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
250617-05:16:05,459 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.7
36301s.
250617-05:16:06,952 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
250617-05:16:06,988 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional
.FunctionalQC>
250617-05:16:08,426 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.433769s.
250617-05:16:08,834 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.su
btract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
250617-05:16:08,848 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces
.morphology.BinarySubtraction>
250617-05:16:08,895 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.04386s.
250617-05:16:10,990 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleS
egmentation".
250617-05:16:11,11 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interface
s.ants.resampling.ApplyTransforms>
250617-05:16:14,261 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 3.2
48942s.
250617-05:16:14,904 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 214.710294s.
250617-05:16:14,938 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
250617-05:16:14,963 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional
.FunctionalQC>
250617-05:16:16,471 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.506899s.
250617-05:16:16,911 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalizati
on.SpatialNormalization" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
250617-05:16:16,919 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.su
btract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
250617-05:16:16,929 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces
.morphology.BinarySubtraction>
250617-05:16:16,934 nipype.workflow INFO:
[Node] Executing "Spatial
Normalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
250617-05:16:16,980 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.049579s.
250617-05:16:18,960 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleS
egmentation".
250617-05:16:18,972 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfac
es.ants.resampling.ApplyTransforms>
250617-05:16:21,928 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 2.9
51788s.
250617-05:16:23,69 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measure
s" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
250617-05:16:23,99 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional.
FunctionalQC>
250617-05:16:24,645 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 1.544989s.
250617-05:16:26,992 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 228.976129s.
250617-05:16:27,89 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.sub
tract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
250617-05:16:27,99 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces.
morphology.BinarySubtraction>
250617-05:16:27,162 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.057994s.
250617-05:16:28,939 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleS
egmentation".
250617-05:16:28,946 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
250617-05:16:28,954 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfac
es.ants.resampling.ApplyTransforms>
250617-05:16:28,989 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional
.FunctionalQC>
250617-05:16:30,990 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 2.00045s.
250617-05:16:33,187 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.su
btract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
250617-05:16:33,211 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces
.morphology.BinarySubtraction>
250617-05:16:33,260 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.048097s.
250617-05:16:33,835 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 4.8
74618s.
250617-05:16:35,88 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizatio
n.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_
in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSe
gmentation".
250617-05:16:35,91 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.Comput
eIQMs.measures" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
250617-05:16:35,105 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfac
es.ants.resampling.ApplyTransforms>
250617-05:16:35,131 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.functional
.FunctionalQC>
250617-05:16:37,550 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 2.414794s.
250617-05:16:38,385 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 3.2
71814s.
250617-05:16:39,86 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.sub
tract_mask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
250617-05:1
6:39,88 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask"
in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
250617-05:16:39,102 nipype.workflow INFO:
[Node] Executing "subtract_mask" <niworkflows.interfaces
.morphology.BinarySubtraction>
250617-05:16:39,107 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.Pl
otContours>
250617-05:16:39,157 nipype.workflow INFO:
[Node] Finished "subtract_mask", elapsed time 0.053575s.
250617-05:16:41,149 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otHeadmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
250617-05:16:41,158 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.Pl
otContours>
250617-05:16:56,283 nipype.workflow INFO:
[Node] Finished "fsl_bet", elapsed time 245.842632s.
250617-05:16:57,168 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otHeadmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
250617-05:16:57,188 nipype.workflow INFO:
[Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.Pl
otContours>
250617-05:16:58,43 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 18.931036s.
250617-05:16:59,73 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasin
k" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds
000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
250617-05:16:59,153 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:16:59,169 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.0051s.
250617-05:16:59,736 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.pa
rcels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
250617-05:16:59,745 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wr
appers.Function>
250617-05:16:59,850 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.09174s.
250617-05:17:01,194 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
250617-05:17:01,268 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:17:01,282 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.013062s.
250617-05:17:01,781 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.pa
rcels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
250617-05:17:01,799 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wr
appers.Function>
250617-05:17:01,852 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.051541s.
250617-05:17:03,217 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
250617-05:17:03,294 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:17:03,320 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000953s.
250617-05:17:03,861 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.pa
rcels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
250617-05:17:03,878 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wr
appers.Function>
250617-05:17:03,958 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.075103s.
250617-05:17:05,175 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
250617-05:17:05,237 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:17:05,243 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000783s.
250617-05:17:05,704 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.pa
rcels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
250617-05:17:05,717 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wr
appers.Function>
250617-05:17:05,775 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.055966s.
250617-05:17:07,196 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
250617-05:17:07,265 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:17:07,292 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.006909s.
250617-05:17:07,854 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.pa
rcels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
250617-05:17:07,869 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wr
appers.Function>
250617-05:17:07,959 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.078166s.
250617-05:17:09,155 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
250617-05:17:09,217 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:17:09,233 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000822s.
250617-05:17:09,780 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Bi
gPlot" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
250617-05:17:09,822 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plott
ing.FMRISummary>
250617-05:17:10,154 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 28.995381s.
250617-05:17:11,229 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Bi
gPlot" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
250617-05:17:11,264 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plott
ing.FMRISummary>
250617-05:17:16,882 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 7.04749s.
250617-05:17:17,734 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 6.455982s.
250617-05:17:18,996 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Bi
gPlot" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
250617-05:17:18,996 ni
pype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/tmp/tmp9dm
8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02
..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
250617-05:17:19,10 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotti
ng.FMRISummary>
250617-05:17:19,27 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plotti
ng.FMRISummary>
250617-05:17:22,470 nipype.workflow INFO:
[Node] Finished "PlotHeadmask", elapsed time 25.278219s.
250617-05:17:23,137 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Bi
gPlot" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
250617-05:17:23,156 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 4.118832s.
250617-05:17:23,171 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plott
ing.FMRISummary>
250617-05:17:24,12 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 5.000554s.
250617-05:17:25,8 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Merg
ePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm
8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
250617-05:17:25,9
nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/tmp/t
mp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..s
ub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
250617-05:17:25,31 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:17:25,37 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:17:25,40 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.
000245s.
250617-05:17:25,46 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000224s.
250617-05:17:27,63 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Mer
gePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
250617-05:17:27,66 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Mer
gePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
250617-05:17:27,85 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:17:27,87 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:17:27,88 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.
000256s.
250617-05:17:27,90 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000
209s.
250617-05:17:27,473 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 4.298897s.
250617-05:17:29,17 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Mer
gePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
250617-05:17:29,23 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Gen
erateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
250617-05:17:29,26 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Gen
erateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
250617-05:17:29,37 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repor
ts.IndividualReport>
250617-05:17:29,41 nipype.workflow INFO:
[Node] Executing "GenerateReport" <m
riqc.interfaces.reports.IndividualReport>
250617-05:17:29,47 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:17:29,48 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.
000261s.
250617-05:17:29,94 cli WARNING:
Building bold report: no exclude index was found
250617-05:17:29,95 cli WARNING:
Building bold report: no exclude index was found
250617-05:17:29,442 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/fu
ncMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run
-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
250617-05:17:29,443 nipype.workflo
w INFO:
[Node] Finished "GenerateReport", elapsed time 0.398342s.
250617-05:17:29,443 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file
_..tmp..tmp9dm8avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/su
b-01_task-flanker_run-2_bold.html
250617-05:17:29,459 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.405865s
.
250617-05:17:31,66 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Gen
erateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
250617-05:17:31,73 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Gen
erateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
250617-05:17:31,79 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repor
ts.IndividualReport>
250617-05:17:31,81 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Gen
erateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..t
mp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
250617-05:17:31,89 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repor
ts.IndividualReport>
250617-05:17:31,90 cli WARNING:
Building bold report: no exclude index was fo
und
250617-05:17:31,96 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repor
ts.IndividualReport>
250617-05:17:31,97 cli WARNING:
Building bold report: no exclude index was fo
und
250617-05:17:31,102 cli WARNING:
Building bold report: no exclude index was found
250617-05:17:31,210 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/fu
ncMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run
-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
250617-05:17:31,223 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.126023s
.
250617-05:17:31,247 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/fu
ncMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run
-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
250617-05:17:31,248 nipype.workflo
w INFO:
[Node] Finished "GenerateReport", elapsed time 0.158243s.
250617-05:17:31,287 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/fu
ncMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..func..sub-02_task-flanker_run
-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
250617-05:17:31,288 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.207413s
.
250617-05:17:33,25 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsp
lots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8a
vtl..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
250617-05:17:33,38 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink
>
250617-05:17:33,43 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000468s.
250617-05:17:33,261 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
250617-05:17:33,268 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:17:33,270 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000386s.
250617-05:17:33,415 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
250617-05:17:33,423 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:17:33,429 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000398s.
250617-05:17:33,563 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
250617-05:17:33,571 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:17:33,575 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000383s.
250617-05:17:33,828 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
250617-05:17:33,835 ni
pype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
250617-05:17:33,836
nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000393s.
250617-05:18:05,829 nipype.workflow INFO:
[Node] Finished "EPI2MNI", elapsed time 173.247449s.
250617-05:18:06,887 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalizati
on.ResampleSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleS
egmentation".
250617-05:18:06,889 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalizati
on.SpatialNormalization" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/
_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
250617-05:18:06,891 nipype.workflow INFO:
[Node] Executing "ResampleSegmentation" <nipype.interfac
es.ants.resampling.ApplyTransforms>
250617-05:18:06,899 nipype.workflow INFO:
[Node] Executing "SpatialNormalization" <niworkflows.int
erfaces.reportlets.registration.SpatialNormalizationRPT>
250617-05:18:08,520 nipype.workflow INFO:
[Node] Finished "ResampleSegmentation", elapsed time 1.6
273149999999998s.
250617-05:18:09,20 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.par
cels" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8a
vtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
250617-05:18:09,29 nipype.workflow INFO:
[Node] Executing "parcels" <nipype.interfaces.utility.wra
ppers.Function>
250617-05:18:09,76 nipype.workflow INFO:
[Node] Finished "parcels", elapsed time 0.045673s.
250617-05:18:10,973 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Bi
gPlot" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
250617-05:18:10,987 nipype.workflow INFO:
[Node] Executing "BigPlot" <niworkflows.interfaces.plott
ing.FMRISummary>
250617-05:18:13,890 nipype.workflow INFO:
[Node] Finished "BigPlot", elapsed time 2.896585s.
250617-05:18:15,43 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Mer
gePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9d
m8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
250617-05:18:15,59 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:18:15,60 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.
000235s.
250617-05:18:15,415 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 132
.68151s.
250617-05:18:16,960 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.in
vert_xfm" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
250617-05:18:16,965 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.Ge
nerateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
250617-05:18:16,966 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.re
sampling.ApplyTransforms>
250617-05:18:16,978 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repo
rts.IndividualReport>
250617-05:18:16,997 cli WARNING:
Building bold report: no exclude index was found
250617-05:18:17,89 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/fun
cMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..func..sub-03_task-flanker_run-
2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
250617-05:18:17,92 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.113026s.
250617-05:18:19,254 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
250617-05:18:19,263 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:18:19,264 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000417s.
250617-05:18:19,744 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-
01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:18:19,747 nipype.workflow INFO:
[Node] E
xecuting "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
250617-05:18:19,751 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-
01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:18:19,751 nipype.workflow INFO:
[Node] S
etting-up "_MNItpms2t11" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_
..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
2506
17-05:18:19,754 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resa
mpling.ApplyTransforms>
250617-05:18:19,762 nipype.workflow INFO:
[Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.
resampling.ApplyTransforms>
250617-05:18:26,90 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 6.329766s.
250617-05:18:26,949 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 7.173974s.
250617-05:18:28,27 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 8.263907s.
250617-05:18:29,323 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-
01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:18:29,335 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed ou
tputs
250617-05:18:29,335 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250617-05:18:29,336
nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf
/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpm
s2t1/mapflow/_MNItpms2t11".
250617-05:18:29,342 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed ou
tputs
250617-05:18:29,342 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250617-05:18:2
9,343 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mr
iqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/
MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:18:29,344 nipype.workflow INFO:
[Node] Cached "_MNItpm
s2t12" - collecting precomputed outputs
250617-05:18:29,344 nipype.workflow INFO:
[Node] "_MNItpms
2t12" found cached.
250617-05:18:48,47 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 151.
110682s.
250617-05:18:49,259 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..ana
t..sub-01_T1w.nii.gz/segmentation".
250617-05:18:49,269 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.in
vert_xfm" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
250617-05:18:49,271 nipype.workflow
INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
250617-05:18:49,281 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.re
sampling.ApplyTransforms>
250617-05:18:51,420 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-
02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:18:51,425 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-
02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250617-05:18:51,433 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.
resampling.ApplyTransforms>
250617-05:18:51,435 nipype.workflow INFO:
[Node] Executing "_MNItpms2t
11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250617-05:18:59,143 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 7.70827s.
250617-05:19:01,410 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 9.973725s.
250617-05:19:01,543 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-
02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:19:01,562 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.
resampling.ApplyTransforms>
250617-05:19:09,330 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 7.766633s.
250617-05:19:11,623 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-
02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:19:11,624 nipype.workflow INFO:
[Node] C
ached "_MNItpms2t10" - collecting precomputed outputs
250617-05:19:11,625 nipype.workflow INFO:
[N
ode] "_MNItpms2t10" found cached.
250617-05:19:11,625 nipype.workflow INFO:
[Node] Setting-up "_MN
Itpms2t11" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250617-05:19:11,641 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed ou
tputs
250617-05:19:11,641 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250617-05:19:1
1,642 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mr
iqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/
MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:19:11,654 nipype.workflow INFO:
[Node] Cached "_MNItpms2t12" - collecting precomputed ou
tputs
250617-05:19:11,654 nipype.workflow INFO:
[Node] "_MNItpms2t12" found cached.
250617-05:19:42,990 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 86.023189s.
250617-05:19:43,394 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.Ar
tifactMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
250617-05:19:43,405 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatom
ical.ArtifactMask>
250617-05:19:53,704 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 10.298012s.
250617-05:19:55,373 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
250617-05:19:55,382 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.
AddProvenance>
250617-05:19:55,551 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.167902s.
250617-05:19:55,721 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.Comput
eQI2" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
250617-05:19:55,726 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomic
al.ComputeQI2>
250617-05:19:55,731 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otAirmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
250617-05:19:55,735 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otArtmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
250617-05:19:55,739 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:19:55,744 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:20:04,741 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 9.000495s.
250617-05:20:05,871 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 76.588865s.
250617-05:20:07,386 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.Ar
tifactMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tm
p9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
250617-05:20:07,394 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatom
ical.ArtifactMask>
250617-05:20:07,700 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 11.954239s.
250617-05:20:12,98 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 4.700488s.
250617-05:20:13,261 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
250617-05:20:13,268 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.
AddProvenance>
250617-05:20:13,393 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.124405s.
250617-05:20:13,522 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.Comput
eQI2" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
250617-05:20:13,524 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otAirmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
250617-05:20:13,529 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otArtmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
250617-05:20:13,532 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:20:13,535 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:20:13,538 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomic
al.ComputeQI2>
250617-05:20:20,290 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 6.752676s.
250617-05:20:22,371 nipype.workflow INFO:
[Node] Finished "SpatialNormalization", elapsed time 135
.470512s.
250617-05:20:23,21 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 9.488333s.
250617-05:20:23,83 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 27.355322s.
250617-05:20:23,264 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.in
vert_xfm" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
250617-05:20:23,268 nipype.workflow INFO:
[Node] Executing "invert_xfm" <nipype.interfaces.ants.re
sampling.ApplyTransforms>
250617-05:20:25,497 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-
03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:20:25,502 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-
03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
250617-05:20:25,508 nipype.workflow INFO:
[Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.
resampling.ApplyTransforms>
250617-05:20:25,508 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2
t12" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:20:25,510 nipype.workflow INFO:
[Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.
resampling.ApplyTransforms>
250617-05:20:25,514 nipype.workflow INFO:
[Node] Executing "_MNItpms2t
11" <nipype.interfaces.ants.resampling.ApplyTransforms>
250617-05:20:29,666 nipype.workflow INFO:
[Node] Finished "_MNItpms2t10", elapsed time 4.150319s.
250617-05:20:30,225 nipype.workflow INFO:
[Node] Finished "_MNItpms2t11", elapsed time 4.709908s.
250617-05:20:31,27 nipype.workflow INFO:
[Node] Finished "_MNItpms2t12", elapsed time 5.506044s.
250617-05:20:31,539 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t10" in "/tmp/tmp9dm8avtl/MR
IQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-
03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
250617-05:20:31,540 nipype.workflow INFO:
[Node] Cached "_MNItpms2t10" - collecting precomputed ou
tputs
250617-05:20:31,540 nipype.workflow INFO:
[Node] "_MNItpms2t10" found cached.
250617-05:20:3
1,541 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t11" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mr
iqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/
MNItpms2t1/mapflow/_MNItpms2t11".
250617-05:20:31,548 nipype.workflow INFO:
[Node] Cached "_MNItpms2t11" - collecting precomputed ou
tputs
250617-05:20:31,548 nipype.workflow INFO:
[Node] "_MNItpms2t11" found cached.
250617-05:20:3
1,549 nipype.workflow INFO:
[Node] Setting-up "_MNItpms2t12" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mr
iqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/
MNItpms2t1/mapflow/_MNItpms2t12".
250617-05:20:31,550 nipype.workflow INFO:
[Node] Cached "_MNItpm
s2t12" - collecting precomputed outputs
250617-05:20:31,550 nipype.workflow INFO:
[Node] "_MNItpms
2t12" found cached.
250617-05:20:48,421 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 34.881925s.
250617-05:21:06,837 nipype.workflow INFO:
[Node] Finished "invert_xfm", elapsed time 43.568864s.
250617-05:21:07,335 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..ana
t..sub-02_T1w.nii.gz/segmentation".
250617-05:21:07,339 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.p
reprocess.FAST>
250617-05:23:25,686 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 276.397876s
.
250617-05:23:27,476 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "
/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..ana
t..sub-03_T1w.nii.gz/segmentation".
250617-05:23:27,479 nipype.workflow INFO:
[Node] Executing "segmentation" <nipype.interfaces.fsl.p
reprocess.FAST>
250617-05:24:05,933 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 178.592292s
.
250617-05:24:07,517 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmon
ize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
250617-05:24:07,518 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
250617-05:24:07,520 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmon
ize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
250617-05:24:07,521 nipype.workflow INFO:
[N
ode] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_wor
kdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_
T1w.nii.gz/PlotSegmentation".
250617-05:24:07,521 nipype.workflow INFO:
[Node] Setting-up "mriqc_w
f.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/AirM
askWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
25
0617-05:24:07,524 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.interfaces.anatomical.
Harmonize>
250617-05:24:07,524 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.vi
z.PlotContours>
250617-05:24:07,527 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.inte
rfaces.anatomical.Harmonize>
250617-05:24:07,531 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.vi
z.PlotContours>
250617-05:24:07,531 nipype.workflow INFO:
[Node] Executing "ArtifactMask" <mriqc.interfaces.anatom
ical.ArtifactMask>
250617-05:24:09,527 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.99879s.
250617-05:24:10,139 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 2.611102s.
250617-05:24:11,710 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
250617-05:24:11,714 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
250617-05:24:11,732 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical
.StructuralQC>
250617-05:24:11,736 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical
.StructuralQC>
250617-05:24:14,786 nipype.workflow INFO:
[Node] Finished "ArtifactMask", elapsed time 7.253761s.
250617-05:24:15,716 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.proven
ance" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
250617-05:24:15,730 nipype.workflow INFO:
[Node] Executing "provenance" <mriqc.interfaces.reports.
AddProvenance>
250617-05:24:16,14 nipype.workflow INFO:
[Node] Finished "provenance", elapsed time 0.267337s.
250617-05:24:16,220 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.Comput
eQI2" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl.
.ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
250617-05:24:16,226 nipype.workflow INFO:
[Node] Executing "ComputeQI2" <mriqc.interfaces.anatomic
al.ComputeQI2>
250617-05:24:18,473 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 10.9390
54s.
250617-05:24:18,721 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 11.1952
48s.
250617-05:24:19,657 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otAirmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
250617-05:24:19,659 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otArtmask" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp
9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
250617-05:24:19,664 nipype.workflow INFO:
[Node] Executing "PlotAirmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:24:19,669 nipype.workflow INFO:
[Node] Executing "PlotArtmask" <mriqc.interfaces.viz.Plo
tContours>
250617-05:24:24,182 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 12.443158s.
250617-05:24:24,375 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 12.637599s.
250617-05:24:25,709 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
250617-05:24:25,729 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:24:25,730 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000863s.
250617-05:24:25,992 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Me
rgePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
250617-05:24:25,994 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
250617-05:24:26,11 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility.
base.Merge>
250617-05:24:26,12 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.
000259s.
250617-05:24:26,12 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFil
eSink>
250617-05:24:26,17 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000958s
.
250617-05:24:26,171 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Me
rgePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
250617-05:24:26,186 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility
.base.Merge>
250617-05:24:26,191 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.000297s.
250617-05:24:27,664 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Ge
nerateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
250617-05:24:27,671 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Ge
nerateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
250617-05:24:27,679 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repo
rts.IndividualReport>
250617-05:24:27,680 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repo
rts.IndividualReport>
250617-05:24:27,899 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/an
atMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/Gener
ateReport/sub-02_T1w.html
250617-05:24:27,903 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.218011s
.
250617-05:24:27,910 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/an
atMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/Gener
ateReport/sub-01_T1w.html
250617-05:24:27,911 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.22956s.
250617-05:24:28,541 nipype.workflow INFO:
[Node] Finished "PlotAirmask", elapsed time 8.875112s.
250617-05:24:28,618 nipype.workflow INFO:
[Node] Finished "PlotArtmask", elapsed time 8.948262s.
250617-05:24:29,570 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
250617-05:24:29,575 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:24:29,577 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.001438s.
250617-05:24:29,684 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
250617-05:24:29,687 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:24:29,688 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000368s.
250617-05:24:35,285 nipype.workflow INFO:
[Node] Finished "ComputeQI2", elapsed time 19.056903s.
250617-05:26:36,454 nipype.workflow INFO:
[Node] Finished "segmentation", elapsed time 188.972851s
.
250617-05:26:37,674 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmon
ize" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..
ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
250617-05:26:37,674 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Pl
otSegmentation" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp
..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
250617-05:26:37,677 nipype.workflow INFO:
[Node] Executing "PlotSegmentation" <mriqc.interfaces.vi
z.PlotContours>
250617-05:26:37,678 nipype.workflow INFO:
[Node] Executing "harmonize" <mriqc.inte
rfaces.anatomical.Harmonize>
250617-05:26:38,814 nipype.workflow INFO:
[Node] Finished "harmonize", elapsed time 1.135444000000
0001s.
250617-05:26:39,681 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measur
es" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
250617-05:26:39,692 nipype.workflow INFO:
[Node] Executing "measures" <mriqc.interfaces.anatomical
.StructuralQC>
250617-05:26:42,23 nipype.workflow INFO:
[Node] Finished "PlotSegmentation", elapsed time 4.344256
s.
250617-05:26:43,689 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Me
rgePlots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9
dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
250617-05:26:43,696 nipype.workflow INFO:
[Node] Executing "MergePlots" <nipype.interfaces.utility
.base.Merge>
250617-05:26:43,697 nipype.workflow INFO:
[Node] Finished "MergePlots", elapsed time 0.00026s.
250617-05:26:47,110 nipype.workflow INFO:
[Node] Finished "measures", elapsed time 7.417248s.
250617-05:26:47,680 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasi
nk" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..tmp..tmp9dm8avtl..d
s000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
250617-05:26:47,687 nipype.workflow INFO:
[Node] Executing "datasink" <mriqc.interfaces.bids.IQMFi
leSink>
250617-05:26:47,689 nipype.workflow INFO:
[Node] Finished "datasink", elapsed time 0.000842s.
250617-05:26:49,680 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.Ge
nerateReport" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..
tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
250617-05:26:49,684 nipype.workflow INFO:
[Node] Executing "GenerateReport" <mriqc.interfaces.repo
rts.IndividualReport>
250617-05:26:49,772 cli INFO:
Generated individual log: /tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/an
atMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/Gener
ateReport/sub-03_T1w.html
250617-05:26:49,773 nipype.workflow INFO:
[Node] Finished "GenerateReport", elapsed time 0.087361s
.
250617-05:26:51,685 nipype.workflow INFO:
[Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.ds
plots" in "/tmp/tmp9dm8avtl/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..tmp..tmp9dm8
avtl..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
250617-05:26:51,688 nipype.workflow INFO:
[Node] Executing "dsplots" <nipype.interfaces.io.DataSin
k>
250617-05:26:51,689 nipype.workflow INFO:
[Node] Finished "dsplots", elapsed time 0.000369s.
250617-05:26:53,739 cli IMPORTANT:
Participant level finished successfully.
250617-05:26:53,739 cl
i INFO:
Generating BIDS derivatives metadata.
250617-05:26:53,740 cli INFO:
MRIQC completed.
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
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Group-level Analysis#
%%bash
mriqc ds000102 \
MRIQC \
group \
--no-sub \
--work-dir MRIQC_workdir \
--nprocs 6 \
--mem-gb 10 \
--verbose-reports \
-v
You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
MRIQC Visual Reports#
MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.
Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.
Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.
These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.
Anatomical Report#
%%capture
! pip install beautifulsoup4
from bs4 import BeautifulSoup, element, Doctype
from IPython.display import HTML, display
with open('./MRIQC/sub-01_T1w.html') as f:
soup = BeautifulSoup(f, 'html.parser')
# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav', 'head']):
tag.decompose()
# for e in soup:
# if isinstance(e, element.ProcessingInstruction):
# e.extract()
# break
with open("./soup.txt", "w") as f:
f.write(str(soup))
# print(str(soup))
display(HTML(str(soup)))
MRIQC: individual T1w report
Summary
- BIDS filename: sub-01_T1w.
- Date and time: 2025-06-17, 05:24.
- MRIQC version: 22.0.6.
- Workflow details:
- Detected a zero-filled frame, has the original image been rotated?
Visual reports
Zoomed-in (brain mask)
Background noise
Approximate spatial normalization
Brain mask
Brain tissue segmentation
Artifacts in background
Head outline
"Hat" mask
Distribution of the noise in the background
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Functional Report#
with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
soup = BeautifulSoup(f, 'html.parser')
for tag in soup(['script', 'style', 'button', 'nav', 'head']):
tag.decompose()
display(HTML(str(soup)))
MRIQC: individual bold report
Summary
- BIDS filename: sub-02_task-flanker_run-1_bold.
- Date and time: 2025-06-17, 05:17.
- MRIQC version: 22.0.6.
- Workflow details:
- Framewise Displacement was computed using
3dvolreg(AFNI) - Framewise Displacement threshold was defined at 0.200000 mm
- Framewise Displacement was computed using
Visual reports
BOLD average
Standard deviation map
FMRI summary plot
Zoomed-in BOLD average
Background noise
Calculated brain mask
Approximate spatial normalization
Other
For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.
Group functional report#
with open('./MRIQC/group_bold.html', 'r') as f:
html = f.read()
display(HTML(html))
MRIQC: group bold report
Summary
- Date and time: 2025-06-17, 05:26.
- MRIQC version: 22.0.6.